PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75524.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 446aa    MW: 48420.8 Da    PI: 6.6526
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75524.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.7e-49461771129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat+ g+Wkatg+dk+++ 
  MLOC_75524.1  46 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNKLEPWDIQEccRIGTgPQNDWYLFSHKDKKYPTGTRTNRATTVGFWKATGRDKAIYP 141
                   69****************************.9***************963444443456*************************************9 PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   + +  ++g++ktLvfy+grap+g+k+dW+mheyrle
  MLOC_75524.1 142 AaGYGHIGMRKTLVFYQGRAPHGHKSDWIMHEYRLE 177
                   867778****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-5436186IPR003441NAC domain
PROSITE profilePS5100553.71546227IPR003441NAC domain
PfamPF023656.9E-2647176IPR003441NAC domain
SuperFamilySSF1019417.85E-54215227IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSVAVVSLYP ITGNNFIPVD PTPSSPLHYC TTRSIMSISV NGQSVVPPGF RFHPTEEELL  60
TYYLAKKVAS QRIDLDVIPD VDLNKLEPWD IQECCRIGTG PQNDWYLFSH KDKKYPTGTR  120
TNRATTVGFW KATGRDKAIY PAAGYGHIGM RKTLVFYQGR APHGHKSDWI MHEYRLEDAT  180
TPGNNPANRA IGNAPYYPGS SSSIRSVVGD QSSAQEDGWV ICRVFKKKNI VVQQQADQNG  240
GGRRTASNNL VAAGAIELSR SNCSSTVTTA SDHAKATHMQ QHYYSASDDA LDHILNQYMH  300
GRSSTTTTSC KQETNATNPS SSALDHLINS ECHNGSSTLY EKLPPLEHVV PGELLPPTEY  360
SGDWDALDRL AAYELNGLSD AASAKTTNGM PFIVDELGGA TAYSGGGRLH VSSITGTGDG  420
DLWSLGRSVS SLHADLTINS FNAVGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-444622915170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678010.0AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701038.11e-140PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP63e-94NAC43_ARATH; NAC domain-containing protein 43
TrEMBLM0Z1Q90.0M0Z1Q9_HORVD; Uncharacterized protein
STRINGMLOC_75524.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.12e-95NAC family protein